When Aku is reborn to set forth his reign of terror, the Emperor's son is sent off to learn the ways of the samurai. That boy becomes a man and attempts to slay Aku with a mighty sword, but Aku banishes him to the future.
The Samurai lands in the future and is named Jack. He is enlisted by a race of dogs to destroy Aku.
Jack gets weapons and beats back Aku's army of beetles saving the canine race.
Jack helps free the Woolies from the tyrannical Chritchellites.
When Jack mistakenly destroys a group of scientists' chance to escape Aku, he and the scientists join forces to try and fix the problem, hopefully returning Jack home as well.
Aku morphs himself into a woman in order to keep Jack from returning to the past to destroy him.
Jack must get past three blind archers to reach an all-powerful wishing well.
Jack meets up with Mad Jack and must battle his darker self.
Jack has an underwater adventure with a jelly-whale and sea monkeys while hunting for an ancient time portal.
Jack goes through a cave full of challenges only to find an old warrior longing to reach Valhalla.
When Jack and a Scotsman meet on a never-ending bridge, they end up shackled together and on the run from bounty hunters.
Jack hooks up with some Chicago gangsters to try and get close to Aku.
Aku tells fairy tales to the children to try and win them over to his side instead of Jack's.
Jack comes upon a monkey-man and agrees to train his tribe in the ways of defending themselves if the monkey-man teaches him how to "jump good".
Story 1: Jack vs. the Worm. Story 2: The Metal-Eaters. Story 3: Jack, the Gargoyle, and the Fairy.
Jack is kidnapped and placed in a chain gang of warriors chosen to battle in front of a coliseum audience against the Dome of Doom's Champions.
The Scotsman needs Jack's help to save his kidnapped wife. But this woman is hardly the distressed damsel the Scotsman makes her out to be.
Jack goes from destroyed village to another looking for those responsible, only to find the destruction was commissioned by Aku.
Jack comes upon ruins of a village and realizes it is his home. He then reflects on the past when he was a young boy.
Jack travels vertically up a mountain with three monks to witness the magic of the mountain only to have the power of the mountain save his very life.
When a flatulent dragon begins stinking out an entire village. Jack slays the beast and ventures inside it to cure to source of its bellyache.
Aku hires the best hunters in the galaxy to track down the most elusive of prey - Samurai Jack.
Aku sends out Demongo, the soul collector, to destroy Jack. Now Jack must fight all the mighty warrior souls that Demongo has collected.
Jack has lost all memory of who he is and it's up to the Scotsman to put the pieces of the puzzle together to save the samurai.
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