The Bebop returns to Ganymede, Jet's home, to drop off a criminal that they've captured. But this trip home for Jet only brings back painful memories. As he tries to answer questions from his past, Spike gets a lead on a new bounty from the local cops.
Jet and Spike must track down a dealer of "Red Eyes," a dangerous, addictive drug that induces berserker rages in its users. Can even Jet's strength stand up to the power of the drug? And has Spike been swayed by the charms of a mother-to-be?
Faye, in an attempt to flee from her debts, joins a cult called Scratch. Its members forsake their bodies, encouraging the transmutation of the human soul into electronic form. Turns out, Scratch's leader is wanted by the police after a number of his followers commit suicide. Now the Bebop's crew has to rescue Faye before more people die.
Still haunted by her past, Faye searches for more clues to her identity. Yet it seems that one of her crewmates is having more luck: Ed is reunited with her father. But the identity of this strange man is suspect. What will Ed do if she has really found her dad?